ParaHaplo is developing parallel computing tools for genome-wide association studies.
Usage:
For filtering repeats
java -jar RF.jar sequence.fq 10
sequence.fq is the sequence data. It must be in fastq fomat.
The second parameter is the threshold value.
For finding repeats
java -jar RepeatFinder.jar sequence.fq 10 tab
Usage
For filtering repeats
java -jar RF.jar sequence.fq 10
sequence.fq is the sequence data. It must be in fastq fomat.
The second parameter is the threshold value.
For finding repeats
java -jar RepeatFinder.jar sequence.fq 10 tab
